obsolete contig [SO_0000149]

A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N’s from unavailable bases.
Tags:

Open obsolete contig in VFB

Term Information

  • ID: SO_0000149
  • Name: obsolete contig
  • Definition: A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N’s from unavailable bases.
  • Synonyms:
  • Type:
  • Comment:

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/SO_0000149",
            "symbol": "",
            "types": [
                "Entity",
                "Class",
                "Deprecated",
                "has_subClass"
            ],
            "short_form": "SO_0000149",
            "unique_facets": [
                "Deprecated"
            ],
            "label": "obsolete contig"
        },
        "description": [
            "A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases."
        ],
        "comment": []
    },
    "query": "Get JSON for Class",
    "version": "c58c844",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/SO_0000143",
            "types": [
                "Entity",
                "Class",
                "Deprecated",
                "has_subClass"
            ],
            "short_form": "SO_0000143",
            "unique_facets": [
                "Deprecated"
            ],
            "label": "obsolete assembly_component"
        },
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/SO_0000353",
            "types": [
                "Entity",
                "Class",
                "has_subClass"
            ],
            "short_form": "SO_0000353",
            "unique_facets": [
                "Class"
            ],
            "label": "sequence_assembly"
        }
    ],
    "relationships": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/BFO_0000050",
                "database_cross_reference": [],
                "label": "is part of",
                "type": "part_of",
                "confidence_value": ""
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/SO_0000148",
                "types": [
                    "Entity",
                    "Class",
                    "has_subClass"
                ],
                "short_form": "SO_0000148",
                "unique_facets": [
                    "Class"
                ],
                "label": "supercontig"
            }
        }
    ],
    "related_individuals": [],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "unique_facets": [
                    "pub"
                ],
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}